SE0420296

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2666
  • Brassica rapa
  • SE0420296
  • Mutator
  • M4
  • A08:2256849-2257369
  • TTTTGATAT
  • TTACCACATTTATAGTATTACTTTTCATATTTACACTAACCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
         TTTTGATATGGGAAA       A     A              A     A TA     G      -----  CACTTTTAAAGGGTAAAAAACAGATATATTTCTAGGGTTAACTAATCTAGACTTAGGGTTTAAAGTTGAAGGGTGAAATAAAATTTTTGGAATGTGAAATTTAGAATTCTAATAAATATATAAATAAATACTTAAAAAATATATACAAAAAAAATTAAAATAGTTTCAAATATAATTTTCGATTTTCA
                        TTACCAC TTTAT GTATTACTTTTCAT TTTAC C  ACCAC TTTACC     CT                                                                                                                                                                                            
                        ||||||| ||||| |||||||||||||| ||||| |  ||||| ||||||     ||                                                                                                                                                                                            A
                        AATGGTG AAGTA CATGGTGAAAAGTA AAATG G  TGGTG ATTTTA     AA                                                                                                                                                                                            
TATAGTTTTCCGATTTAAAATACA       A     C              G     - --     -      CTATA  AGTTTTTATAAAAGAAGTAATTCACCGTTTTCTGAGAATATGGGAACAATATATATATTATTTAATAATAAATTTATTTTTATTATTAATTTTTTTATTCTTTTTTAAATACAAAAACTTAATATGAAAAAGTTTAATCTTTAAAAAATATTTAATTAAAAAACTTAAAAAAAAAAGTTTTAAAGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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