SE0430297

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2667
  • Brassica rapa
  • SE0430297
  • hAT
  • Hat82
  • A10:8133975-8134234
  • CATATTTC
  • CAGTGCCGTCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
CATATTTC   TG       -----AAAGA         --  TAAAACCTGTCAAATAATGTGGCCCTTCATAAAAATTACCAATGAAAAATGTATTTAAAACTGGTTGTGGTCGAACTAGAGACCAAAAAG
        CAG  CCGTCCC          TTTATGAGG  CT                                                                                          
        |||  |||||||          |||||||||  ||                                                                                          G
        GTC  GGCAGGG          GGTTACTTT  AA                                                                                          
CTTTATAC   CG       AAGATATTCC         GT  CTGAAGTCCGGTGTATAATATTTATGTTTTTCATCCGGTGTAAAAGTTTTTAATGAACATCAAATCTACCCTTTTCATTCTCTACAATCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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