Plant MITE

SE0420298

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2668
Brassica rapa
SE0420298
Mutator
M8
A04:3294362-3294522
AAAACTTTA
GGGAAATTG

Secondary structure and sequence

TSD TIR

5'

3'

AAAACTTTA   -A     CACCCCATACACTAGACTTTT       TT  --CC        TAAATCCCACA    TATACTTTTTTCCATA   ACAA
         GGG  AATTG                     ACCCTAA  AA    AAATACCT           ATGT                GAC    
         |||  |||||                     |||||||  ||    ||||||||           ||||                |||     
         CCC  TTAAC                     TGGGATT  TT    TTTATGGA           TACA                CTG    
ATTTCAAAA   AC     --------------CAAATTT       TT  TACT        --------TAC    ----------------   ATCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0420298

AAAACTTTAGGGAAATTGCACCCCATACACTAGACTTTTACCCTAATTAACCAAATACCTTAAATCCCACAATGTTATACTTTTTTCCATAGACACAAACTAGTCACATCATAGGTATTTTCATTTTTTTAGGGTTTTAAACCAATTCACCCAAAACTTTA

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