SE0450302

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2672
  • Brassica rapa
  • SE0450302
  • PIF/harbinger
  • To49
  • A07:7561516-7561789
  • TTA
  • AGAGCATCTGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  A          CAA   ---     GAGAGGAGATCATAACTTTAATTTTTTATTATTTCTTTTTTATTTTTTTCGTTTGATTTTTTTTTAAAAAAAAATAAGAAGACTAATCGCGGACCGCCACATGGCGTGA
  AG GCATCTGCAT   TAA   AGTTT                                                                                                             
  || ||||||||||   |||   |||||                                                                                                             A
  TC CGTAGACGTA   CCC   TTACG                                                                                                             
AT  C          ACT   AAG     TATCCAAGTGTGGAAAGGGTTTTTTTTTTTTAATATTATAAGAGTAAAAATACTTGAGTCAGGAACGTCCAAATGACCCTACTTGAGCCAAGTAGTGACATTGCGCCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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