SE0450305

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2675
  • Brassica rapa
  • SE0450305
  • PIF/harbinger
  • To41
  • A02:27033285-27033911
  • TAA
  • AGGGCCTGACTGGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TA     C          AA       GGTTGCGGTTGCGGGAGTTTGCGGATGCGGGTGGTTGCGGTTTCTAGCGGTTTTAAGAGATTTGTACGACTGGTTCTGCGGTTAAAAATTGGTGCGTTTGCGGGATACTTATGACTGGTTAACTACCAAGTGCAACAGCGGTTAAATAATAAATTAACAATATTTACATTTTATACAATTATAAAAATATCAAAAATAATAATATTATAATAAATATAAAAGTTATATTTAGAAAGTTATAGTTTAATTTTTTTAAAAATATAGAAAATATTTTTATTTTAAAGTT
  AGGGC TGACTGGTTT  CCGCAGC                                                                                                                                                                                                                                                                                              
  ||||| ||||||||||  |||||||                                                                                                                                                                                                                                                                                              T
  TCCCG ACTGACTAAA  GGCGATG                                                                                                                                                                                                                                                                                              
AA     T          AG       GTGGGCGTTTGCGTCGAAAACGCCAACCATCGCCAACAACCGCAAAACGTTGTTAGCGAGTTTGACAAGGTTTGGCAAGGTTTGGCGAGGTTTAGCGAGGCTTGGAGTATTTAAGTTTTCGACCAAGGTCGATCGCAAACGCCAACGCCCGCCAACGCCCTCCTATTTTTTTTAAAGAAAAAAAGGTTTTGTTATATTTATGTTTTTATTTTTATAAGTTATTTTTTTAATTTAATCTTAATATTTTTACGATTTTATATAGATAATTTAAAATTAATTATAATAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End