SE0450306

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2676
  • Brassica rapa
  • SE0450306
  • PIF/harbinger
  • To13
  • A06:5520734-5521146
  • TTA
  • AGGGGGTGTTAGTGGGATATGGATTTGTAGTGATTGTTGAAATTCTCAAATTC

Secondary structure and sequence

TSD    TIR
5'



3'
TT      T          TAT      G  GT  TT     --A     C   T  -----------------------------------TAT    A   GTTGGTGGATTCTAAGATTCTTACTAAAATCTAGTGTTATTGGTTTGATGATTGTTTAATGACTTACAAAATCTCTTGTTATTCAAAAAGTTTGGTTTTTAATGATTCTAAGTTTCCATCAAA
  AGGGGG GTTAGTGGGA   GGATTT TA  GA  GTTGA   ATTCT AAA TC                                      TGTT TTG                                                                                                                           
  |||||| ||||||||||   |||||| ||  ||  |||||   ||||| ||| ||                                      |||| |||                                                                                                                           T
  TCCCCC CAATCACCCT   CTTAAA AT  CT  CAACT   TAAGA TTT AG                                      AAAG TAT                                                                                                                           
AT      C          CAT      A  AT  --     AAC     T   C  TTCTCTAAACAATTTAAACATTTCTCAATATTTCTCAT    -   AAAATTTTCAAATACTTTTACAAGATTAAGTTCCTAAAATTCTTAGATCTCCTTTATACGTTCTAAAAACTTCAAAACAGAATACTCATTTTAATAGATCTTAAGTTAAGGGTTATTGAGATC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End