SE0450307

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2677
  • Brassica rapa
  • SE0450307
  • PIF/harbinger
  • To45
  • A02:8685798-8686068
  • TTA
  • TAGAGCATCTCCAATGGAGAGTTCTACCCATTGGAATTTTAAACATTTATACGTGTGTATGTATATATTATATAAGTGTATGTAAGTGTGAAGACCATTTTTTGGGGAAGAACCTCATGCAAATGTTCTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
T           C     A A    TAC        A              AC                                       A                     C         T        AATC
 TAGAGCATCTC AATGG G GTTC   CCATTGGA TTTTAAACATTTAT  GTGTGTATGTATATATTATATAAGTGTATGTAAGTGTGA GACCATTTTTTGGGGAAGAAC TCATGCAAA GTTCTAAA    
 ||||||||||| ||||| | ||||   |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||    A
 ATCTCGTAGAG TTACC C CAAG   GGTAACTT AAGATTTGTAAATA  TACACATACATATATAATATATTCACATACATTCACATT CTGGTAAAAAACCCTTTCTTG AGTACGTTT TAAGATTT    
A           A     - C    TTA        C              --                                       -                     A         C        ATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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