Plant MITE

SE0430308

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2678
Brassica rapa
SE0430308
hAT
Hat83
A07:11690106-11690331
CTTGTATG
GCAGGGGCGGACCCAAGTGAAGAGGAGTGGGGTCA

Secondary structure and sequence

TSD TIR

5'

3'

CTTGTAT    G          --       AG  G        C   AC  CACAAAAAACATGTTAAAATTATGTTTTACATAGAAAAACAGTAAAGAATTGGTAGCAGTGTT
       GCAG GGCGGACCCA  AGTGAAG  GA TGGGGTCA CTG  AC                                                               
       |||| ||||||||||  |||||||  || |||||||| |||  ||                                                               G
       CGTC CCGCCTGGGT  TCACTTT  CT ACCCCAGT TTT  TG                                                               
GTATGTT    A          CC       AA  G        -   --  ATTACTTTCACAGAGACGACCCGAAGCTTCAGCTCAAGACACCACAGTTTCCCGCGTGAATTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430308

CTTGTATGCAGGGGCGGACCCAAGTGAAGAGGAGTGGGGTCACCTGACACCACAAAAAACATGTTAAAATTATGTTTTACATAGAAAAACAGTAAAGAATTGGTAGCAGTGTTGGTTAAGTGCGCCCTTTGACACCACAGAACTCGACTTCGAAGCCCAGCAGAGACACTTTCATTAGTTTTTGACCCCAGTCAATTTCACTCCTGGGTCCGCCACTGCTTGTATG

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