SE1620037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2718
  • Manihot esculenta
  • SE1620037
  • Mutator
  • M7
  • scaffold11581:637898-638334
  • TTAATTTTA
  • AGGGTAGTTTATAATATAGTTCCTGAGGTTTAACAAAATTCACAACTTAGTCCCTGCTATTTTGATGGGAAACAATTTAGTCCCT

Secondary structure and sequence

TSD    TIR
5'



3'
TTAATTTT    T       AA       CC         A                 T       A      T   -                AAGG   C     -A                A       ATTCAC      ----      -- CAATTT   CC   AAATTTCATTTTTAATAATAATTTAGTACCTTTAATTTTAATAATTTGTAACAATTTA
        AGGG AGTTTAT  TATAGTT  TGAGGTTTA CAAAATTCACAACTTAG CCCTGCT TTTTGA GGG AAACAATTTAGTCCCT    TTT ATTTT  TAACAAAATAGTCATT TGTTAAA      TATTAA    ACTATA  A      AGT  TTC                                                          
        |||| |||||||  |||||||  ||||||||| ||||||||||||||||| ||||||| |||||| ||| ||||||||||||||||    ||| |||||  |||||||||||||||| |||||||      ||||||    ||||||  |      |||  |||                                                           
        TCCC TTAAATG  ATATCAG  ACTCTAAAT GTTTTGGGTGTTGAATT GGGACGA AAGATT CTC TTTGTTAAATCAGGGA    AAA TAAAA  ATTGTTTTATCAGTAA ACAATTT      AATAGA    AGTTGA  T      TTA  ACT                                                          
ATTTTAAT    T       AC       AA         G                 T       A      -   A                CTTA   A     CA                A       ------      AATC      TA ------   --   ATTTGAGTTAGAGTTTAATTTCTCTGTTTGAACAATATTTATAATTTTGATATTCCTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End