SE1750004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2745
  • Ricinus communis
  • SE1750004
  • PIF/harbinger
  • To1
  • 29851:852458-852885
  • TTA
  • AGAGCATCCCCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT        C     --  -         -  TTAA    CATAATTTCTATAATAAAGAGCATCTTAAAAAATATTCACATATAAAGAGTAAAACATTTTATTTAAGTTCAACAGACTCTTTATATTTTATTCTATATCTTGTTTTCATTTCCATAAGCATTAATAGTTTTAATTTTTCTTTCATTTTTTTTTTAATTTTTGCCAATAGGAAAACA
  AGAGCATC CCAAT  GA TGCTCTTTA TT    AGAG                                                                                                                                                                                 
  |||||||| |||||  || ||||||||| ||    ||||                                                                                                                                                                                  
  TCTCGTAG GGTTA  TG GAAATAAAT CA    GTTT                                                                                                                                                                                 
AT        A     CG  A         A  ----    GAGAAATTCTCAGTAAAATATTTAACTGTGAGGTTACGTGAGAAATAAGCAATTTATACTTCATCTCTCAGTTAAACCGAGAGATGTATACCTCTCGGTTTGAAGTGAGAAATGAAATATAAATTATCTACGTGATGTTCAAAGATAGGTAAACTAAATTAACCATAAACATTAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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