SE1720007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2748
  • Ricinus communis
  • SE1720007
  • Mutator
  • M4
  • 30162:637194-637611
  • TATTATCAA
  • AGACCTAATAGTCTAAAAAATCCAAATCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTATCA  A            AAA        T    --------    TAGTTTGCTATTTGGCCAATTTTTAAAAATTATCAATTTAGCCATGATTTGACCAATTAAGTGCAATTTTAGCCAAATTGAGTTACTGGTCAAAATTAAGCAACATGGTTGGTAACATGGATGCAATTTAGGAAATGAGAATTCAAAATTAAGTAACACGTA
        AG CCTAATAGTCTA   AATCCAAA CTTT        GCAG                                                                                                                                                                  
        || ||||||||||||   |||||||| ||||        ||||                                                                                                                                                                  T
        TC GGATTATCGGAT   TTAGGTTT GAAA        AAAC                                                                                                                                                                  
AACTATTA  C            GTG        -    ATACTCTA    CGGTTAAGAATTTTTTAACAGTTAAATCGGTGCTAAATTGTTTAACTCACATTAAAACCGGATTAACTCGATAAACAGTTTTAATTCGTTGTGCTTGTCATTGTACTTGCGGTTAATCCTTTACTCTTTAGGTTTAACTACCCAAGATTACGGTGTAATAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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