SE1720010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2751
  • Ricinus communis
  • SE1720010
  • Mutator
  • M6
  • 30113:1021296-1021829
  • TATATATAG
  • TATATATAGGCCTAATAACACCAAAAATCCATACCTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
       T         A   CC      C  T  C    -CAGCCAATT          C      GTT   A       C   A                 AA                 C            CAAAATAG     C   ---- C   ATCAACAATATACACATCACTGCCATATATATTTACACATCACACATGAGTTACCAAGGTCAGGTTATAGATGAATAGAAAAGTGAATGACAAATGAAAATCATGAATAAAGAA
 TATATA AGGCCTAAT ACA  AAAAAT CA AC TTTA          TGAATTTGGT CATCCT   AAT TTTACTT AAT GCCTGGTTTGGCTAATT  TTGCAATTATAGCTAAA TAAAATCTCGGT        GGTGA GTG    T ATT                                                                                                                  
 |||||| ||||||||| |||  |||||| || || ||||          |||||||||| ||||||   ||| ||||||| ||| |||||||||||||||||  ||||||||||||||||| ||||||||||||        ||||| |||    | |||                                                                                                                   
 ATATAT TCCGGATTA TGT  TTTTTA GT TG AAAT          GTTTAAATCG GTAGGA   TTA AAATGAA TTA CGGGCTAAACCGATTGA  AACGTTAATATCGGTTT ATTTTAGAGCCA        TTCTA ATT    A TGG                                                                                                                  
T      -         C   AA      A  T  T    AAAGAAAAAT          A      AAT   A       T   C                 CC                 A            -------A     -   TACG -   GAGAATTGAGATCTATGATTAGAGAAAAATGAAATGGTTATAGCAAACGGAGAATTTTTTATGTATTTTAGTACTACTTTCACTCTTTTCTTTACTGAAGTGGAAAGTAAGAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End