SE1720012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2753
  • Ricinus communis
  • SE1720012
  • Mutator
  • M7
  • 30225:626368-626784
  • GTGTATTTG
  • GTATTTGTGGGTAAATTATATTGGCGGTTATTGAATTTTACATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
  GT    TTG                                 C     -ATAA     TAA        C   A   T  T     T     -  A   A      C          A   AA   C    ACACACTTAG                ATGATCACCA      G  A     ACC            CCCAAGT     TTAA
    GTAT   TGGGTAAATTATATTGGCGGTTATTGAATTTTA ATTTT     TAAAA   TATTAAAC TTT ATT GT ACTAA TGGTT CT AAC TTAATT TAATAACACC ATA  TTT TCCG          AGAGTAAATTATATGG          AACTTT CA TTTGT   AAAAAAATACTG       ATCTT    
    ||||   ||||||||||||||||||||||||||||||||| |||||     |||||   |||||||| ||| ||| || ||||| ||||| || ||| |||||| |||||||||| |||  ||| ||||          ||||||||||||||||          |||||| || |||||   ||||||||||||       |||||     
    TATG   GCCCATTTAATGTAACTGTCAGTGGTTTAAAAT TAAAA     ATTTT   ATAGTTTG AAA TAA TA TGATT ATCAA GA TTG AATTAA ATTATTGTGG TAT  AAA AGGT          TTTTATTTAATATATC          TTGAAA GT AAACA   TTTTTTTATGAT       TAGAA    
TATT    --T                                 A     ACATG     TCC        A   C   C  T     T     T  C   A      A          C   AC   A    --CACTCACA                CATCAATTGC      G  G     CTA            -----TT     TTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End