SE1720014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2755
  • Ricinus communis
  • SE1720014
  • Mutator
  • M5
  • 30156:251902-252290
  • TAATTTTTA
  • GGGTAAATTGTCCAGCTGGTACCAAACTTTAGGATTGTATATCAATTTGATACTAAGACTTTAATTTGAATCAAAATGGTACCAAGAATACATAAATGTATATCAATTTAGTCCAAATGTCAAATTTCCGAGAAAATGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTTTTA                      C       A             A                          C               A    T   T               C        A         G  --A     AACA            AAGAAAA   AATTGACGTGGCACATGCTGAG
         GGGTAAATTGTCCAGCTGGTAC AAACTTT GGATTGTATATCA TTTGATACTAAGACTTTAATTTGAAT AAAATGGTACCAAGA TACA AAA GTATATCAATTTAGT CAAATGTC AATTTCCGA AA   ATGGT    TGGCAAGCTGAG       GTT                      
         |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||||||||||||||| |||||||| ||||||||| ||   |||||    ||||||||||||       |||                      A
         CCCATTTAACGGGTCGACCATG TTTGGAA CTTGACATATAGT AAACTATGGTTCTGAAATTAAACTTA TTTTACCATGGTTTT ATGT TTT TATATAGTTAAATCA GTTTGCAG TTAAAGGCT TT   TACTA    ACCGTTCGACTC       CTC                      
ATTTTTAAC                      -       C             C                          A               C    T   T               A        A         G  GCC     CTAC            -------   CATATAAGACCAACAAAACGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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