SE1720016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2757
  • Ricinus communis
  • SE1720016
  • Mutator
  • M3
  • 29702:92217-92721
  • ACTCTTCCG
  • GGGTAAAAAGCATTAATGATACATAACTATG

Secondary structure and sequence

TSD    TIR
5'



3' 
ACTCTTCCG       AA    T    A   -         TCACTTACATC  C                 A           A           G T  CATTA       -------AA      GTACCTTTATATTTTTGGCCATTTTACGTTGATGTGGCAGCCAGATTCTTTCTCTAGCTTCCATGTTACCACTGACCGGTATATAATTAACCCTAGTAAGCCTAAGAATCCTAATCTCTCAAATATAAT
         GGGTAAA  GCAT AATG TAC ATAACTATG           CG TTGGTATCTCAACTCAA AATCATAAAAA TGGTATCTTAA T AC     ATGAATC         GTAAGG                                                                                                                                 
         |||||||  |||| |||| ||| |||||||||           || ||||||||||||||||| ||||||||||| ||||||||||| | ||     |||||||         ||||||                                                                                                                                 T
         CCCATTT  CGTA TTAC ATG TATTGGTAC           GT AACCATGGAGTTGAGTT TTAGTGTTTTT ACCATGGGGTT A TG     TACTTAG         AAAAGT                                                                                                                                 
GCTTTCTCA       AA    T    C   A         CGATAACATAA  A                 A           -           G C  -ATTG       CAGAATTTG      CACTAATATATTACTATACTGTAGGTTTAAGATAGTGATTGATGGTATAATGGAGAATAAACCTGTGTTGATTAGGATCAATCTACAATTTGTAAGAGAGTTGAGGAGATAGAACTTGAGTATGGAACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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