SE1730021

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2762
  • Ricinus communis
  • SE1730021
  • hAT
  • Hat2
  • 30060:178075-178723
  • AAATAGCC
  • CATAGTTGTTAAAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAATAGCC                GAAAAGGTGCAC      GATAAGGGCTCTTGATGCCTGAGGCGCAAGGCGCAAAGCGCAAAGCAAGGTGCGCGCCTGATAGAAGTGAGGCGCAAAAGATAAAATAAAATAAAACTAGGACCCATAACACAACCTATGCATAAAATAAAAAACATAACACAACCAAAGAAAAGAAATAAAAAGATCATGACAATTATGTTCAAGAGGCATTTAACAATAAAAAGACATGTTCAAAAGAGATGATAAAAGTAAAACATAGTCTTACAAATAACTAGAAGTCCTAGGATAGTAGAAATCCTAAAGCAT
        CATAGTTGTTAAAGGT            CAAGGC                                                                                                                                                                                                                                                                                                
        ||||||||||||||||            ||||||                                                                                                                                                                                                                                                                                                C
        GTATCAACAGTTTCCG            TGCGGA                                                                                                                                                                                                                                                                                                
CCGATAAA                ------------      CTCCGCTGTCCGCGTTCGGAATCGCGGAGTTCGGTTCTTTCCGTCCGCTGAAGTGATTCCGCGTGCGGAAAGAAAATTTTGTATGTTACTAGAGTCAGGAAGTAGTATCTGAATTATATCTTATACATACGAGTAGGTGTGAATTAATAGAGGTTTTTCTTAAATTTTTTTAGTTTCTTTCTTCTAATCCCTTTTTTCTGTAACTAGTTCCTTTCTTCTCTTCTTAACGGATCTTCACATCATCCTGGTTCTGGTATTAATATCTGAATGTTATATTATCATTACCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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