SE1720024

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2765
  • Ricinus communis
  • SE1720024
  • Mutator
  • M9
  • 30183:449064-449606
  • AAATAAAAG
  • AGGGAAAAGTATAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
AAATAAA                 CATA      T   A    C            AG      ----TT            CAAATAC           ATTT       G    A        C                      A          A                                       -        C   CA   C      CA   TACTC     ----   ATTATAATTTTTAAAAAAAATTAGTTCTTTTT
       AGGGAAAAGTATAAAAA    CCTTGT GTT GGCG TTTTGCACTTAG  GATTGT      TTTTATGACAAA       CTTGTGATTTA    TCTTATA TTTT CTACCTTA AAATTAATATCTTTAGATTTCT TGATTTAATA TAGTATAATATTTATTTTCAATAATAAAATTATTTATTG GTGATTTA CAT  AAT AACTAT  TGA     TTAAA    AAT                                
       |||||||||||||||||    |||||| ||| |||| ||||||||||||  ||||||      ||||||||||||       |||||||||||    ||||||| |||| |||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||  ||| ||||||  |||     |||||    |||                                A
       TCCTTTTTCATGTTTTT    GGAACA CAA TCGC AAAACGTGAATT  CTGACA      AAAATACTGTTT       GGACACTAAAT    GGAATGT GAAA GATGGAAT TTTGATTATAGAAATCTAAAGA ACTAAATTAT ATCATATTATGAGTAAAAGTTATTGTTTTAGTGAATAAT CACTAAAT GTA  TTA TTGATG  ACT     AAGTA    TTA                                
AAATAAA                 TCAC      -   A    A            CA      CCAAAT            CTTCAAA           GAAT       A    C        A                      C          A                                       T        C   TA   A      TA   ----T     CAAT   TTTTAATTATATATAAAATTAAAATAATCCTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End