SE4250005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2773
  • Cajanus cajan
  • SE4250005
  • PIF/harbinger
  • To2
  • Scaffold000336:106442-106575
  • TTA
  • ATAGCGTGTTTGTTTTCACGTTGAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                CA    -     AAACTGAACCGTA     TCCCTTCCC    TTCT       TGC
  ATAGCGTGTTTGTTTT  CGTT GAATG             ATTCA         TTAC    ACTTTTC   
  ||||||||||||||||  |||| |||||             |||||         ||||    |||||||    
  TATCGCACAAACAAAA  GCAA TTTAT             TAAGT         AATG    TGAAAGG   
AT                TG    A     -----------AG     TGCCCAAAA    ----       TTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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