SE4230006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2774
  • Cajanus cajan
  • SE4230006
  • hAT
  • Hat1
  • CcLG11:30057751-30058144
  • GAACAAGC
  • CTAGGGGTGTGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GAACAAG          G  AAAAATCCAAATT    CGAACCGATCCATAACCGATCCGATCCATATTGAAAAATCCGATCCATTTTGAAAAAAATCCGAACCGAACCACTTTATAAAACCGGTTCATTTATCCGATCCATTTTTACAAAGTGGATTGGTTCGGTTCGGTTTGGTTTTCTAAAAAACCGATCCATATATGAG
       CTAGGGGTGT CA             GATC                                                                                                                                                                      
       |||||||||| ||             ||||                                                                                                                                                                      T
       GATCCCCACA GT             ACCT                                                                                                                                                                      
CGAACAA          A  -------------    AGCCAAAAAAGTTTTTTGGCTAGGTTTGGCTTGGCTTGGCAAAATATTTTCACCTAGCCAATTGGCTAGGTAAAAAATATTTCACCTAGCCAAACCAAAAAAATTTTATACCTAGGCAAAAAAACTTTAACCTAGCCAAGCCACGCCACGTCAATAGGTGAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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