SE4220010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2778
  • Cajanus cajan
  • SE4220010
  • Mutator
  • M3
  • CcLG06:21160619-21160833
  • TTTAATTAA
  • TTAATTAAGAGGAATGCTAGAAACACTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
T        -            --AA         AATGCTCCTCTTAATAGTTAAT   CT A      T     A          AAACCTACAAAA   AGAGAGAGAATCATTGAATAGG
 TTAATTAA GAGGAATGCTAG    ACACTTTTT                      ACA  C CTCTCA TGGTT AAATTTATTG            TCT                      
 |||||||| ||||||||||||    |||||||||                      |||  | |||||| ||||| ||||||||||            |||                       
 AATTAATT CTCTTTATGATC    TGTGAAAAA                      TGT  G GAGAGT ACCAA TTTAAATAAC            TTT                      
         T            GTTG         -------------------ACT   AT A      T     C          ----------CT   GTGTTAAACCACTCAGGTTGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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