SE4230011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2779
  • Cajanus cajan
  • SE4230011
  • hAT
  • Hat2
  • CcLG11:18315104-18315400
  • GGTAATAG
  • CAGGGACGGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GGTAATAG              -       AATAC  -- GG  CCGAGAATAAATAATATATAATTTATAATAAATGAAAATTAAAGTCCAAAAGTGATACCACATAGCAGGCCGTACCAGAAGTCCAAAAGTTGAATAAAAAAATAAATTT
        CAGGGACGGAGCCA GGATTTC     TG  G  GG                                                                                                             
        |||||||||||||| |||||||     ||  |  ||                                                                                                             G
        GTTCCTGCCTCGGT CCCCCCT     GG  G  CC                                                                                                             
GATAATGG              T       -----  AT --  CACGGTGCCGGGGGGGTTGTTAAAATTAAAAAAAAATATATGTATATATAATGATATACCGTGGGGGATAAAAATTATATTTGAGTATACATATTAATTTACTTATTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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