SE4220012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2780
  • Cajanus cajan
  • SE4220012
  • Mutator
  • M1
  • Scaffold000295:58494-58693
  • AAAGTTAAA
  • GAGTTAATCACCTATACATTATCAGTGTAAAATTTTTTTACATTAGCAACCAATCATATCTTTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAGTTAAA          C         A          A            A                     TAATGACATGTC            AATAAAA
         GAGTTAATCA CTATACATT TCAGTGTAAA TTTTTTTACATT GCAACCAATCATATCTTTTAA            AGTTGCTTATTT       
         |||||||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||            ||||||||||||       T
         CTCAATTAGT GGTATGTGA AGTCACATTT AAAAAAATGTGA TGTTGGTTAGTATAGAAAATT            TCAACGAATAAA       
AAATTGAAA          A         C          -            C                     ------------            ATAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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