SE4220017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2785
  • Cajanus cajan
  • SE4220017
  • Mutator
  • M4
  • Scaffold000175:89865-90279
  • TTTTAAAAT
  • TTTTAAAATGAGAAGGGTTATAATAACACTGGTATAACTTTTACTAAGTATTACATTGTTCAATAACTTTATATTAAATGTGAATTTTGTAAATCCAACCGTTAAATTGAAAGTT

Secondary structure and sequence

TSD    TIR
5'



3'
         T                   C    A   C                                                        C         A          -CATAT     TATA  T    A CAAGTTTTGTTAAAATTGAACAACAACTTGAAGGTAATCAAAGTGCTCATATTTTAATATATTTTGAAATG
 TTTTAAAA GAGAAGGGTTATAATAACA TGGT TAA TTTTACTAAGTATTACATTGTTCAATAACTTTATATTAAATGTGAATTTTGTAAAT CAACCGTTA ATTGAAAGTT      CACTT    TG TTAT T                                                                       
 |||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||      |||||    || |||| |                                                                        
 AAAATTTT CTCTTCCCAATATTATTGT GCCA ATT AAAATGATTCATAATGTAGCGAGTTATTGAAATATAATTTACACTTAAAATATTTA GTTGGCAAT TAACTTTCAA      AGAAT    AG TATA T                                                                       
T        -                   A    C   A                                                        A         C          AAAATG     --CT  -    - ATGTTTTAAAATATACTTAAGTTCTACTAAACTATGAAGTAAGAACATTTTATTTTAACTGCATTGTATAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End