SE4230019

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2787
  • Cajanus cajan
  • SE4230019
  • hAT
  • Hat3
  • Scaffold131275:13143-13607
  • GCAGGGCC
  • GGCCTAGGGATGGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GCAG     ----           ----    --- C        TACGGGTTTCATGATACTCGTCCCCATCCCCGCAAGTTAAACTCATTCCCGTCCCCGTCCCCATATATATCCGTCGGGTATAGATTTTCATCCCCATCCCCATCCCCGTTGGGTATCGGGTATACCCGTACCCGTACCCTATGTAAATTAATTTTTTTATTATATTATAATTATAATTAGGTTATTTCTTTATCT
    GGCCT    AGGGATGGCAA    CGGG   G GGGGCGGG                                                                                                                                                                                                   
    |||||    |||||||||||    ||||   | ||||||||                                                                                                                                                                                                   C
    CCGGG    TCCCTACCGTT    TGAG   G GGCGCCCA                                                                                                                                                                                                   
         ACGA           TATA    CAT -        TTATGGGCTTGGGCAGGGCTGAAACTGTATGGGCCAAACTGGCCCATGCCCATACCCATGCCCATACATGAATGGGCGGGGCATGGGCATGGGCATGGGCAGGGACAATAGTAAAAATTAAATTATAAGTGAAAATTAAATTAATATAATTTTTTTAAATTATAAAAAAAATACACACTAATAAATAATATTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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