SE4250021

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2789
  • Cajanus cajan
  • SE4250021
  • PIF/harbinger
  • To6
  • Scaffold128870:289228-289372
  • TAA
  • TGTGTGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAC        TAGAACAGC      A  TGATTTTTCACGTTTGACTGGAAGGAGAAAATAATAGCTTCTCCTTA
    TGTGTGTT         GTCAAA CG                                               
    ||||||||         |||||| ||                                               A
    ACACACAA         ACCAAA GT                                               
AATC        ---------      -  TAAAACTTTGAGTTAAAGAAGCAGAGAGAGGTGCAGGTTCATTGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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