Plant MITE

SE4220028

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2796
Cajanus cajan
SE4220028
Mutator
M1
CcLG02:36498522-36498721
ATATTTAAA
GAGTTAATCACCTATACACTGCTAGTGTAAATTTTTTTTACATTGACAGATAATCAGAGCCGTTAATAGTGTCTTTT

Secondary structure and sequence

TSD TIR

5'

3'

ATATTTAAA                     C         TT                A          C      A         CATCTGCTCATTTA
         GAGTTAATCACCTATACACTG TAGTGTAAA  TTTTTTACATTGACAG TAATCAGAGC GTTAAT GTGTCTTTT              
         ||||||||||||||||||||| |||||||||  |||||||||||||||| |||||||||| |||||| |||||||||              A
         CTCAATTAGTGGATATGTGAC GTCACATTT  AAAAAATGTGACTGTC ATTAGTCTCG CAATTA CACAGAAAA              
AAATTTATA                     A         -C                A          A      C         AATAAAATTAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4220028

ATATTTAAAGAGTTAATCACCTATACACTGCTAGTGTAAATTTTTTTTACATTGACAGATAATCAGAGCCGTTAATAGTGTCTTTTCATCTGCTCATTTAATTAAATTAAAATAAAAAAGACACCATTAACAGCTCTGATTAACTGTCAGTGTAAAAAACTTTACACTGACAGTGTATAGGTGATTAACTCATATTTAAA

Copy Cancel