SE4220033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2801
  • Cajanus cajan
  • SE4220033
  • Mutator
  • M7
  • Scaffold133035:123700-123921
  • ATCTCCTTA
  • GAGAAATGCTAATAACACTTTGTCACACTCTTTTAATCACATATTTTTTCATTGGTTGAAATTTATTCAAAAATGCAAAATTTGTTATGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCTCCTTAA   AAA            -   -GTC    ---TC       -   A       TC        A        C    A  C      -T  -TAT   TCACCTT
          GAG   TGCTAATAACAC TTT    ACAC     TTTTAAT CAC TATTTTT  ATTGGTTG AATTTATT AAAA TG AAAATT  GT    GTC       
          |||   |||||||||||| |||    ||||     ||||||| ||| |||||||  |||||||| |||||||| |||| || ||||||  ||    |||        
          CTC   ACGATTGTTGTG GAG    TGTG     AGAATTG GTG GTAAAAA  TAACCAAT TTAAATAA TTTT AT TTTTAA  CA    CAG       
AATTTCTCTA   GTC            T   AAAT    TAATA       T   A       --        A        C    A  T      CC  TTTT   TAATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3