SE4220045

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2813
  • Cajanus cajan
  • SE4220045
  • Mutator
  • M11
  • CcLG09:1907205-1907475
  • TAAAAGTAA
  • AGAGTAAATTACATCAACACCTCTTGTAGTTCTATGAAATAGCACTAACACCTTGC

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAGTA  A           CA          TA   CTA      A    --TA  A      ----A    --  AGGT    AA -     ATCTTATAGGGTCACAATGTAATGTTTTTCAAATAATTAAGGAGGTT
        AG GTAAATTACAT  ACACCTCTTG  GTT   TGAAAT GCAC    AC CCTTGC     TTCT  TA    TTAC  T AACCT                                               
        || |||||||||||  ||||||||||  |||   |||||| ||||    || ||||||     ||||  ||    ||||  | |||||                                                
        TC CATTTAATGTG  TGTGGGGGAT  CAA   ACTTTA CGTG    TG GGGATG     ATGG  AT    GTTA  T GAAGG                                               
AATGAAAA  A           AC          TC   AAC      A    TTTA  G      AAAAG    GG  ----    -- T     AATTAACAAACTTTTTATAATATAATCGTGGGGAATATGTAATGAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End