SE4220046

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2814
  • Cajanus cajan
  • SE4220046
  • Mutator
  • M5
  • CcLG02:21210673-21211307
  • ATAAAACAA
  • GGCTAAAAGCCTAATTTGGTCCCTCATAATAATTTAAAATTTCAATTTAGTCCCACTTTATTTTTTGTTTCAATTTAGTCCCCAATAATTTAAAAACACATCAATGTGGGACTTCTATCCAAATTTC

Secondary structure and sequence

TSD    TIR
5'



3'
ATAAAACAA                        C      A      A                     -                A     C           AAC  AT      G     -  TA  C       ACAAAC   G  AAATGTGGATGATGTGGATGCTACGTAGATGCATAGGTGGCAAGGTTTCCTCCTCCTTTTTTAATGCATCTAGAATGGACCGTTCTGAAACCAGAACGACCCGTTCTAATTGCACTCGTCATGTGTTAATTTTGCATCTAGAACGGCCCATTCTTAAACCATCCGGAACGA
         GGCTAAAAGCCTAATTTGGTCCCT ATAATA TTTAAA TTTCAATTTAGTCCCACTTTA TTTTTTGTTTCAATTT GTCCC AATAATTTAAA   AC  CAATGT GGACT TC  TC AAATTTC      GGT TT                                                                                                                                                                           
         |||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||   ||  |||||| ||||| ||  || |||||||      ||| ||                                                                                                                                                                           C
         CCGATTTTTGGATTAAACCAGGGA TATTAT AAATTT AAAGTTAAATCAGGGTGAAAT AAAAAACAAAGTTAAA CAGGG TTATTAAATTT   TG  GTTACA CCTGA AG  AG TTTAAAG      TTA TG                                                                                                                                                                           
AACAAAATA                        A      A      C                     T                C     A           -AA  AC      G     C  -C  T       ---AAA   -  TCAAACCCGTAAAAGGTACACTTTTTTTTTTTTTTTACACTATTAAAAGGTGCACCGTTCCCAGGATATGCATACAGTACACAATTAAAACATAGACCTTACCGGGCAAGACTTTGGTCTTACCAGGCAAGACGAACGTGATCAACACACAATTAACACGTAGACCTTGCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End