Plant MITE

SE4250053

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2821
Cajanus cajan
SE4250053
PIF/harbinger
To18
CcLG07:8455747-8455882
TTA
AGTGCATGTTTGGTTCTACATC

Secondary structure and sequence

TSD TIR

5'

3'

TT  T          -   T  A  -----------------CATGCTCCA     AAGTAAGAATCACATCAAAAT
  AG GCATGTTTGG TTC AC TC                          GGTTT                     
  || |||||||||| ||| || ||                          |||||                     T
  TC CGTACAAACC AAG TG AG                          TTCGT                     
AT  T          T   -  A  TTAAAATCAACCTACACCTAGTTACC     TTTAAATCAACGAAAATGTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE4250053

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE4250053