Plant MITE

SE4220056

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2824
Cajanus cajan
SE4220056
Mutator
M9
CcLG05:4116815-4117011
AAATGTAAT
TGAGTAATGTTACATGTACAACAAAAATTGTACAACAACTTGTACAATAT

Secondary structure and sequence

TSD TIR

5'

3'

AAATGTAA            C                G    ACA             AAAT         -  C          --------------      TT
        TGAGTAATGTTA ATGTACAACAAAAATT TACA   ACTTGTACAATAT    TTTGTGTTT TC CTCTCTATCA              CTTCAT  
        |||||||||||| |||||||||||||||| ||||   |||||||||||||    ||||||||| || ||||||||||              ||||||  A
        ACTCATTACAAT TACATGTTGTTTTTAA ATGT   TGAACATGTTGTA    AAACACGGA AG GAGAGGTAGT              GGGGTA  
AAATGTAA            A                G    ---             GTGT         T  A          AATTATTATAGAGA      TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4220056

AAATGTAATGAGTAATGTTACATGTACAACAAAAATTGTACAACAACTTGTACAATATAAATTTTGTGTTTTCCCTCTCTATCACTTCATTTATTATGGGGAGAGATATTATTAATGATGGAGAGAGATAGGCACAAATGTGATGTTGTACAAGTTGTAGAATTTTTGTTGTACATATAACATTACTCAAATGTAAA

Copy Cancel