SE4250057

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2825
  • Cajanus cajan
  • SE4250057
  • PIF/harbinger
  • To9
  • CcLG11:2089675-2089797
  • TGA
  • GCCTGTGTTTGGTTTCACGTTTGAAACGTGAAAAATCACGTTTAACATGAAGCTACACATTGTAGCTTCATGTTAAACGTGATTTTTCACGTTTCAAACGTGAAACCAAACACGC

Secondary structure and sequence

TSD    TIR
5'



3' 
  TGA  CT                                                     C
     GC  GTGTTTGGTTTCACGTTTGAAACGTGAAAAATCACGTTTAACATGAAGCTACA 
     ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| A
     CG  CACAAACCAAAGTGCAAACTTTGCACTTTTTAGTGCAAATTGTACTTCGATGT 
AGTCA  --                                                     T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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