SE4220060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2828
  • Cajanus cajan
  • SE4220060
  • Mutator
  • M3
  • CcLG01:7462659-7462873
  • TTAAAATAA
  • AGGAGTGATAGTAATACACTTTCTAACATACTCACTTTCATTGGTTAGAATTTATTGAAAACTACAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAATAAG       A                 --------------       CA    C       A          -     T        AGAAGAGAGA   ATTAAATATGG
          AGGAGTG TAGTAATACACTTTCTA              ACATACT  CTTT ATTGGTT GAATTTATTG AAAAC ACAAAATT          ATC           
          ||||||| |||||||||||||||||              |||||||  |||| ||||||| |||||||||| ||||| ||||||||          |||            
          TCTTTAC ATCGTTATGTGAGAGAT              TGTGTGA  GAGA TAACCAA TTTAAATAAC TTTTG TGTTTTAA          ACC           
AATAAAATTA       G                 TCTGTGAAAAAATT       TG    T       C          C     -        ---------A   AATCAGGGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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