SE4250066

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2834
  • Cajanus cajan
  • SE4250066
  • PIF/harbinger
  • To8
  • Scaffold132768:89028-89292
  • TAA
  • AGGGTCTGTTTGGGTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  -CTTC    A  AC                    A    G    ATGA                 A   C     T     T  C     ----------AA    T       CT TC
  AGGGTCTGTTTGGGTAAA     TTCA AA  ATTTCTAGGAGAGAAAAATA GAAG AAAA    AATAAGTTTTTCCATAA CTA AATTA CTTAT CA AAGTT            TTTG AGAAGTT  T  
  ||||||||||||||||||     |||| ||  |||||||||||||||||||| |||| ||||    ||||||||||||||||| ||| ||||| ||||| || |||||            |||| |||||||  |   
  TCCCAGACAAACCTATTT     AAGT TT  TGAAGATTCTCTTTTTTTAT CTTT TTTT    TTATTCGAAAAGGTATT GAT TTGAT GAATA GT TTCAA            AAAC TCTTCAA  A  
AA                  AAAAA    C  CA                    C    G    --AG                 C   T     C     C  A     ATTTTATTCTAA    C       TT TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3