SE4220070

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2838
  • Cajanus cajan
  • SE4220070
  • Mutator
  • M4
  • CcLG06:16385189-16385607
  • TATATATAT
  • TATATATATATGAAGAGGGCTCAAACGATATCAGTATAACTTTTACTAAATATTACAC

Secondary structure and sequence

TSD    TIR
5'



3'
              AA     -C    AC      A            C            CACTC                                     C    A     A  G   TTTATTCTTAG     -A      AAAT          -TCCT    GATTTGATATTTTATTCTTATAAAACAAAATTAATGTAATATATACATTT
  TATATATATATG  GAGGG  TCAA  GATATC GTATAACTTTTA TAAATATTACAC     AATAATTTTATATTAAATGTGAATTTTATAAATTCAA CGTT GATTA AA TTC           ATCAT  TATATA    TTTATATTAA     AGAT                                                  
  ||||||||||||  |||||  ||||  |||||| |||||||||||| ||||||||||||     ||||||||||||||||||||||||||||||||||||| |||| ||||| || |||           |||||  ||||||    ||||||||||     ||||                                                  C
  ATATATATATAT  CTTCC  AGTT  CTGTAG CATATTGAAAAT ATTTATAATGTG     TTATTGAAATATAATTTACACTTAAAATATTTAGGTT GTAA TTAAT TT AAG           TAGTG  ATATAT    AAATATAGTT     CAAT                                                  
AT            CC     TA    AA      C            A            ATAAA                                     A    C     A  G   ---------TA     AA      ----          TAAAA    TTTAACTTGTTGAATTTCTATTAGTTTCATAAATATAAAATAATATAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End