Plant MITE

SE4250076

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2844
Cajanus cajan
SE4250076
PIF/harbinger
To25
CcLG07:12466790-12466979
TAA
AGAGCACCTCTAATGGGGTTACTTATAAGCAACCCCACTTGCCACATCAGCCT

Secondary structure and sequence

TSD TIR

5'

3'

TA  AG  C     A       A           C              C     AAAAAG   ---   GTGAGTTGCTTAAAATTTATCAAAGTTGT
  AG  CA CTCTA TGGGGTT CTTATAAGCAA CCCACTTGCCACAT AGCCT      AAG   TAA                             
  ||  || ||||| ||||||| ||||||||||| |||||||||||||| |||||      |||   |||                             T
  TC  GT GAGGT ACCCCAA GAATATTCGTT GGGTGAACGGTGTA TCGGA      GTG   AAG                             
AA  CG  A     C       C           A              A     ------   AAA   GAAAAAAGAATTCTTAACCACGAATATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4250076

TAAGAGCACCTCTAATGGGGTTACTTATAAGCAACCCCACTTGCCACATCAGCCTAAAAAGAAGTAAGTGAGTTGCTTAAAATTTATCAAAGTTGTTTATATAAGCACCAATTCTTAAGAAAAAAGGAAAAAGTGAGGCTAATGTGGCAAGTGGGATTGCTTATAAGCAACCCCACTGGAGATGGCCTAA

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