Plant MITE

SE4230081

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2849
Cajanus cajan
SE4230081
hAT
Hat3
Scaffold000112:86468-87026
ACCTTGAG
CTTGAGTAGGGATGGCA

Secondary structure and sequence

TSD TIR

5'

3'

AC      --           -----          T A  T   ---   TTTATGATACCCGTCCCCGTCCCCGCGACACAAACTCATCCCCGTACCCATACCTGTACCCGCCGGGTATATGATTTTCATCCCCATCCCCATCCCTGTCGGGTATCGGGTATACCCGTACCCGTAAAAAATTATTTTTTTTTGCAAAAAAAATATATAATGTTTTTAAATTATTTTTCTATTATATTATAATTATAATTAGATTATTTCTTTATCTCATATTTTAATAAAGAGA
  CTTGAG  TAGGGATGGCA     ACGGGGCGGG C GG ACG   GGT                                                                                                                                                                                                                                           
  ||||||  |||||||||||     |||||||||| | || |||   |||                                                                                                                                                                                                                                           T
  GAGTTC  ATCCCTACTGT     TGGACATGGG C CC CAT   GGG                                                                                                                                                                                                                                           
        CA           TTATT          - A  -   TAT   CTTGGACAGGGCTGAAACTGCCCTTTATGGGCCAAACTGGCCCATGCCCATGCCCATGCCCATTTTTAGCTATTTAGTTTGGCCCATGCCCATGCCCATATCCATATATGTATGGGCGGGGCATGGGCACGGACATGGGCATGGGCTAAATTAATATAAATTTTTTAAATTATAAAATAATACACATTAATAAATAATATTACACTTTATAAATATCAACATATTAATAATTCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4230081

ACCTTGAGTAGGGATGGCAACGGGGCGGGTCAGGTACGGGTTTTATGATACCCGTCCCCGTCCCCGCGACACAAACTCATCCCCGTACCCATACCTGTACCCGCCGGGTATATGATTTTCATCCCCATCCCCATCCCTGTCGGGTATCGGGTATACCCGTACCCGTAAAAAATTATTTTTTTTTGCAAAAAAAATATATAATGTTTTTAAATTATTTTTCTATTATATTATAATTATAATTAGATTATTTCTTTATCTCATATTTTAATAAAGAGATTTCTTAATAATTATACAACTATAAATATTTCACATTATAATAAATAATTACACATAATAAAATATTAAATTTTTTAAATATAATTAAATCGGGTACGGGTACAGGCACGGGTACGGGGCGGGTATGTATATACCTATACCCGTACCCGTACCCGGTTTGATTTATCGATTTTTACCCGTACCCGTACCCGTACCCGGTCAAACCGGGTATTTCCCGTCAAAGTCGGGACAGGTTCGGGTATTACCCACGGGTACAGGTTTATTTGTCATCCCTAACCTTGAG

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