SE4250090

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2858
  • Cajanus cajan
  • SE4250090
  • PIF/harbinger
  • To1
  • CcLG06:7930562-7930781
  • TAA
  • AGAGCATCTGCAATGAGAGTTGCTTATAAGCAACTCCCTGTGCTACATCACTGTCACATCAATTCTACCTTATTTTATGGGTTGCTTAAATTTTAGCAGAGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA         G AA  A A            C    C                    C    A    -    T             C                   AGTTG
  AGAGCATCT C  TG G GTTGCTTATAAG AACT CCTGTGCTACATCACTGTCA ATCA TTCT ACCT ATTTTATGGGTTG TTAAATTTTAGCAGAGTTG     
  ||||||||| |  || | |||||||||||| |||| |||||||||||||||||||| |||| |||| |||| ||||||||||||| |||||||||||||||||||      
  TCTCGTAGA G  AC C CAACGAATATTC TTGG GGACACGGTGTAGTGATGGT TAGT AAGA TGGA TGAAATACTCAAC AATTTAAAATCGTCTCAAC     
AA         G CC  - -            A    A                    T    C    C    -             A                   GATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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