SE4220099

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2867
  • Cajanus cajan
  • SE4220099
  • Mutator
  • M5
  • CcLG07:11288793-11289203
  • TAGTAATTA
  • TAGTAATTAGGCTAAAACCCTAATTTGGTCCCTTATAATATTTTAAAGTTTCAGTTTAGTCCCACTTTAATTTTTGGGTTCAATTTAGTCCCATCTGTCAAAAATACTAACAATGTTTATCTTCCGTTTAAATTTCTCAAACGCTGTTTAAGAGCCATG

Secondary structure and sequence

TSD    TIR
5'



3' 
    A                                A                       C                           C        C      A   A        A                               A   ---     ---A  A      T  TGATTCCCATGGTGTGAATCACATAAAAAAA
TAGT ATTAGGCTAAAACCCTAATTTGGTCCCTTATA TATTTTAAAGTTTCAGTTTAGTC CACTTTAATTTTTGGGTTCAATTTAGT CCATCTGT AAAAAT CTA CAATGTTT TCTTCCGTTTAAATTTCTCAAACGCTGTTTA GAG   CCATG    GA TCACAC CG                               
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||| |||   |||||    || |||||| ||                               T
ATTA TGATCCGATTTTGGGATTAAATCAGGGAATAT ATAAAATTTCAAAGTTAAATCAG GTGAAATTAAAAACCCAAGTTAAATCA GGTGGATA TTTTTA GAT GTTACAAA GGAAGGTAGATTTAAAGAGTTTGCGGCAAAT CTC   GGTAC    AC TCTTAG TG                               
    A                                C                       A                           A        A      A   C        C                               C   ACA     ACTA  -      -  CCCGCACTAAGAGTATTGAGAATGAATCGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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