SE4250106

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2874
  • Cajanus cajan
  • SE4250106
  • PIF/harbinger
  • To15
  • CcLG08:5402002-5402145
  • TTA
  • AGCGTGTGTTTGCTTCGGATTTTGGACGTGAAAATTCACGTTTACAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  C         C  CG     -         -----------AAA    C        AAAGCAAAAAAT        CCA
  AG GTGTGTTTG TT  GATTT TGGACGTGA              TTCA GTTTACAG            TCAAGTTT   
  || ||||||||| ||  ||||| |||||||||              |||| ||||||||            ||||||||    
  TC CGCACAAAC AA  CTAAG ACTTGCATT              AGGT CAAATGTT            AGTTTAAA   
AT  A         C  AA     T         CAAAAGAAAGAGAG    A        ------------        TGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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