SE4210110

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2878
  • Cajanus cajan
  • SE4210110
  • Tc1/Mariner
  • St2
  • CcLG11:32689583-32689882
  • TA
  • TACTCCCTCCGTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
    C           ---------------     TTTCATGTTTAAGGTTTATGCACAAGAATTAAGAAAATGATTGATATTTTAGTTTTTCAAAATATTTATTACTTATTTTCTTATTATACCCTTTAAGTGGTTAGAGAAGAAATAGGTACAT
TACT CCTCCGTTTTT               TTTTG                                                                                                                         
|||| |||||||||||               |||||                                                                                                                         T
ATGA GGAGGCAAAAA               ACTGT                                                                                                                         
    C           ATAAGTATTAGCAAA     AATAAAAAAACAAGAAAAAAGTAACAGTAAAAAGATTTTAGTTACTGAAGAATTAAAAGAAAAAGTAAAAATAGGAACTATTAATTACACATAAATGACTTGTTACACAAATAAGTAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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