Plant MITE

SE4230111

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2879
Cajanus cajan
SE4230111
hAT
Hat6
CcLG11:37458609-37459179
ATATTTAT
ATATTTATTAGAGCTGTCAAAATGGGCTCAGCCCGGTGAGCCAACCCGGCCCACCACGGGTTCGAGCC

Secondary structure and sequence

TSD TIR

5'

3'

   TT                     CTC        -GA   -AA                  C     ---    -            TTTTTGCAAATTTCAGTGTGGGCCAATTTTAAACCCGGCCCACTAACAACCCGGCTCACCCGGGTTCAACCCGTGGTGAGCCGGGCTGACCCACCAGCCCATAAAAAAAAAAAAAAAATTTCTGCTATTGGGTTGGGCCAAATAAAACTTCATAGACCATCATAGGTTCTCAATTTTATGTATTTTTTCTTCAAATTATG
ATA  TATTAGAGCTGTCAAAATGGG   AGCCCGGT   GCC   CCCGGCCCACCACGGGTT GAGCC   GGGT TGGGCTAAATTT                                                                                                                                                                                                        
|||  |||||||||||||||||||||   ||||||||   |||   |||||||||||||||||| |||||   |||| ||||||||||||                                                                                                                                                                                                         
TAT  ATAATCTCGACAGTTTTGCCC   TTGGGCCG   CGG   GGGCCGGGTGGTGCCCAA CTCGG   CCAC CGGTTGGGTTGG                                                                                                                                                                                                        
   TT                     --A        GGC   GCC                  -     AAA    C            GCCGAGCAAATAACCACTCGACCTTTTTTAACTCGGGCCGGGCCGGGTGGTGCCCAACCACCCGATTTGCCCAACCGAGTGGATTAAACTTTTTTAGTGGATTAAATTTTTTTACATTAGTTTAAATTACGGATTAGGACGTTTTTATCATACGTGTATTCGAAAAGATCTCTTTTCATTTATTTAAGGATGTGATTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4230111

ATATTTATTAGAGCTGTCAAAATGGGCTCAGCCCGGTGAGCCAACCCGGCCCACCACGGGTTCGAGCCGGGTTGGGCTAAATTTTTTTTGCAAATTTCAGTGTGGGCCAATTTTAAACCCGGCCCACTAACAACCCGGCTCACCCGGGTTCAACCCGTGGTGAGCCGGGCTGACCCACCAGCCCATAAAAAAAAAAAAAAAATTTCTGCTATTGGGTTGGGCCAAATAAAACTTCATAGACCATCATAGGTTCTCAATTTTATGTATTTTTTCTTCAAATTATGTAATTAGTGTAGGAATTTATTTACTTTTCTCTAGAAAAGCTTATGTGCATACTATTTTTGCAGGATTAGGCATTAAATTTGATTACATTTTTTTAAATTAGGTGATTTTTTCAAATTAGGTGAGCCAACCCGTTTAGCCCACCAACCCGTGGTGGGCCGGGCCGGGCTCAATTTTTTCCAGCTCACCAATAAACGAGCCGGGTTGGGTTGGCCCACCAAAGGCTCAACCCGTGGTGGGCCGGGCCGGGCCGGGCCGGGTTACCCGTTTTGACAGCTCTAATATTTAT

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