Plant MITE

SE4220112

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2880
Cajanus cajan
SE4220112
Mutator
M1
CcLG08:3589548-3589740
TTATAATAA
TATAATAAGAGTTAATCACCTATACACTACTAGTGTAAAGTTTTGACAGTCAATCAGAGCCGTTAATAGTGCCTTTT

Secondary structure and sequence

TSD TIR

5'

3'

T   A              C         AC              -------GA                               CATCTGCTC    AA
 TAT ATAAGAGTTAATCA CTATACACT  TAGTGTAAAGTTTT         CAGTCAATCAGAGCCGTTAATAGTGCCTTTT         ATTT  
 ||| |||||||||||||| |||||||||  ||||||||||||||         |||||||||||||||||||||||||||||||         ||||   
 ATA TATTCTCAATTAGT GATATGTGA  GTCACATTTCAAAA         GTCAGTTAGTCTCGGCAATTATCACGGAAAA         TAAA  
A   A              C         CA              AATGTGATC                               AAATAAAAT    TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4220112

TTATAATAAGAGTTAATCACCTATACACTACTAGTGTAAAGTTTTGACAGTCAATCAGAGCCGTTAATAGTGCCTTTTCATCTGCTCATTTAATTAAATTAAAATAAAAAAAGGCACTATTAACGGCTCTGATTGACTGCTAGTGTAAAAAACTTTACACTGACAGTGTATAGCTGATTAACTCTTATAATAA

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