Plant MITE

SE4240117

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2885
Cajanus cajan
SE4240117
CACTA
Ca4
Scaffold000323:56885-57581
AAT
TCACTAGTGGAAAA

Secondary structure and sequence

TSD TIR

5'

3'

AA         G    TTAGCA         ACCCC  TTACGTCAGAAATACGAAAATTCGACGTAAAAAAAACGCGGTGACATTTTTGTAATTTTTGCGAACTTTTTACGTCGGACCCTACCAGGTCCGACGTAAAAAAGAACGCAAATTTGAATAAGAGAGCGCGAGGCACACCGCGCCCATTCACTCCATCACTTTTCATTTTTTTCTCTCTAAACCCTCTCCCTCTCCTTTGTTACTGAATCGTTTTTTTGTCTTTTGCAGAGGAATGAACTCTTTGTTACTCATTTGCACATTGTTGCTGCTTCTTAGGTATGAATCAAGGTTTCGTTAGCACTTTTCTACTTC
  TCACTAGTG AAAA      TATTACGTT     TT                                                                                                                                                                                                                                                                                                                        
  ||||||||| ||||      |||||||||     ||                                                                                                                                                                                                                                                                                                                         
  AGTGATCAT TTTT      ATAATGCAA     TG                                                                                                                                                                                                                                                                                                                        
TA         G    CTCCAC         ---CC  TAAAAGTCGAAAAATGCAGTCTTTTGCATGGCTGCATCTTCGCCCTCTGCATTTAAAATGCAGCCTAGAAGTTTTGGCTGCATTTAAATGCAGCCTGTAATTCTGTTGGCTGCATTTTTTCATCCCTTTTTTTATATATTTTTTTGTATTTTTACGGTCGTCTTGCCGCCGGCAAGACGAACGTCTTGTCCGGCAAGATGAACGTCTTGTTCGGTAAGTCGAAGCATATTGTTGGGTTTTCTTTTGCGGGTGATGGATGTGTTTATCTTGTTGGTTTTTTAGTTTATTTTGTCTATCGCTCTCATCGTTACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4240117

AATCACTAGTGGAAAATTAGCATATTACGTTACCCCTTTTACGTCAGAAATACGAAAATTCGACGTAAAAAAAACGCGGTGACATTTTTGTAATTTTTGCGAACTTTTTACGTCGGACCCTACCAGGTCCGACGTAAAAAAGAACGCAAATTTGAATAAGAGAGCGCGAGGCACACCGCGCCCATTCACTCCATCACTTTTCATTTTTTTCTCTCTAAACCCTCTCCCTCTCCTTTGTTACTGAATCGTTTTTTTGTCTTTTGCAGAGGAATGAACTCTTTGTTACTCATTTGCACATTGTTGCTGCTTCTTAGGTATGAATCAAGGTTTCGTTAGCACTTTTCTACTTCGCATTGCTACTCTCGCTATCTGTTTTATTTGATTTTTTGGTTGTTCTATTTGTGTAGGTAGTGGGCGTTTTCTTTTGGGTTGTTATACGAAGCTGAATGGCTTGTTCTGCAAGTAGAACGGCCTGTTCTGCAAGCAGAACGGCCGCCGTTCTGCTGGCATTTTTATGTTTTTTTATATATTTTTTTCCCTACTTTTTTACGTCGGTTGTCTTAATGTCCGACGTAAATTTACGTCGGTTTTGAAGATCCGACGTAAAATTTACGTCTCCCGCTTCTACGTCGGTACGTTTTCTGACGTAAAAAGCTGAAAATGTCCAACGTAATACACCTCTTTTGTACTAGTGAAT

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