SE4220118

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2886
  • Cajanus cajan
  • SE4220118
  • Mutator
  • M4
  • CcLG10:5617840-5618261
  • CACACATAT
  • ATATATAGGAGAAGAATCAAATAATATTAGTATAGCTTTTAACAACTATTATACCGTTTAATAAATATATATTAAATGTGATTTTTTTTTATCTAACCATTGAA

Secondary structure and sequence

TSD    TIR
5'



3'
CACAC      -    GAA  ATC    A     A  A       T  C           CG        --A     A          T      -----   T   -ACC      -----------T      T  ATATGACGTTGTATGTTTATGTCAAATTTCATTAAAATTGAACAACAATTTGAAGTAAATCAAAATGTTCATATTTTAGTATGT
     ATATAT AGGA   GA   AAAT ATATT GT TAGCTTT AA AACTATTATAC  TTTAATAA   TATAT TTAAATGTGA TTTTTT     TTA CTA    ATTGAA            TATAAC TC                                                                                    
     |||||| ||||   ||   |||| ||||| || ||||||| || |||||||||||  ||||||||   ||||| |||||||||| ||||||     ||| |||    ||||||            |||||| ||                                                                                    T
     TATATA TCCT   CT   TTTA TGTGA TA ATTGAAA TT TTGATGATGTG  GAGTTATT   ATATA AATTTACACT AAAAAG     AAT GAT    TAACTT            GGATAT AG                                                                                    
 TATA      C    -AC  -AA    C     G  C       T  A           AT        AAA     C          T      TTTTA   -   AATC      TAAAAAAAATGA      -  TATATATAATTTAAAATTTAATTAAGTTCTACTAAACTATAGAATAAGTATATTTAGTTTTAACTATATTATATATGTAAATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End