Plant MITE

SE4220121

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2889
Cajanus cajan
SE4220121
Mutator
M1
CcLG06:14423278-14423477
TTCTTAAAA
TTAAAAGAGTTAATCACCTATACACTGCTGGTGTAAAGTTTTTTTATACTGGCAATCAATCATATCTTTTAATAGTGT

Secondary structure and sequence

TSD TIR

5'

3'

TTC    -            C        T C         G                      C           TAG   CATG  A      T    AA
   TTAA AAGAGTTAATCA CTATACAC G TGGTGTAAA TTTTTTTATACTGGCAATCAAT ATATCTTTTAA   TGT    TT GTTATT ATTT  
   |||| |||||||||||| |||||||| | ||||||||| |||||||||||||||||||||| |||||||||||   |||    || |||||| ||||   
   AATT TTCTCAATTAGT GATATGTG C ATCACATTT AAAAAAATGTGACTGTTGGTTA TATAGAAAATT   ACG    AA TAATAA TAAA  
 AA    C            A        C A         -                      A           TCA   AATA  A      -    AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4220121

TTCTTAAAAGAGTTAATCACCTATACACTGCTGGTGTAAAGTTTTTTTATACTGGCAATCAATCATATCTTTTAATAGTGTCATGTTAGTTATTTATTTAATAAAATAATAATAAAATAAGCAACTTTAAAAGATATAATTGGTTGTCAGTGTAAAAAAATTTACACTAACCGTGTATAGATGATTAACTCTTCTTAAAA

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