Plant MITE

SE4210137

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2905
Cajanus cajan
SE4210137
Tc1/Mariner
St2
CcLG06:14809432-14809727
TA
TACTCCCTCCGTTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

        C        TTGTT   -C    -AAG       -----------ACAAT     AGAAAATGATTGATATTTTAGTTTTTTAAAGTATTTATTACTTATTTTTCTTGTAATACTCTTTAGTGGTTGGAGAAGAAATAAGTACATT
TACTCCCT CGTTTTTT     TGA  GTTT    GTTATGC                AATTA                                                                                           
|||||||| ||||||||     |||  ||||    |||||||                |||||                                                                                           G
ATGAGGGA GCAAAAAA     ATT  CAAA    TAATACG                CAGTA                                                                                           
        A        TAAGT   AA    ACCG       AAAAAAAAAAAAGTAA     AAAAATTTTAGTTACTGAATAATTAAAAGAAAAAGTAAAAATAGGAACTATTAATTACATACAAATAACTTGTTACACGGATAAGTAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4210137

TACTCCCTCCGTTTTTTTTGTTTGACGTTTAAGGTTATGCACAATAATTAAGAAAATGATTGATATTTTAGTTTTTTAAAGTATTTATTACTTATTTTTCTTGTAATACTCTTTAGTGGTTGGAGAAGAAATAAGTACATTGAAAAATGAATAGGCACATTGTTCAATAAACATACATTAATTATCAAGGATAAAAATGAAAAAGAAAATTAATAAGTCATTGATTTTAAAAAATGACAATGAAAAAAAAAAAAGCATAATGCCAAAACAATTATGAATAAAAAACGAAGGGAGTA

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