SE4250139

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2907
  • Cajanus cajan
  • SE4250139
  • PIF/harbinger
  • To37
  • Scaffold125850:77185-77596
  • TTA
  • TAGGCTTTGTTTGGGGGAGAAGAAGGAATAGAAGAGAATAAGAGAGAATAGGTGAGAATTGATTTGATAGGAATTAGG

Secondary structure and sequence

TSD    TIR
5'



3'
T       -    ---         --------------   A   A    -------A       ---------------    A  ---A    T        ATT   TA         TAA    TTGAGTGAAATAGAATGAAAGTTGTAGTTGTTTGGTAGAGTGGAATTAAGTGAGAAATAAAGTGAATTTGGTATTTACAATTACTATTTTACCCTCATTTTAT
 TAGGCTT TGTT   TGGGGGAGA              AGA GGA TAGA        GAGAATA               AGAG GA    TAGG GAGAATTG   TGA  GGAATTAGG   GAAA                                                                                                       
 ||||||| ||||   |||||||||              ||| ||| ||||        |||||||               |||| ||    |||| ||||||||   |||  |||||||||   ||||                                                                                                       A
 ATTCGGA ACAA   ACCTCCTCT              TCT CCT ATCT        CTTTTGT               TCTC CT    ATTC CTCTTAAC   ACT  CCTTAATCT   CACC                                                                                                       
        T    AGC         AAATTATCCCTCCC   A   A    CACCTAAA       TGTAAACACAAACTG    -  ATAA    -        ---   --         --T    CAGGGTGTAGTAAAAAATATGGGATAGGTAACTCCCCTAAGAACACCTAAAACTTTTTTACACATTTTAATGTATTTTGTTTTTTATAATTAAGATTAATATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End