Plant MITE

SE4250140

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2908
Cajanus cajan
SE4250140
PIF/harbinger
To18
CcLG11:3951765-3951900
TTA
GTATGTTTGGATTCA

Secondary structure and sequence

TSD TIR

5'

3'

TTAGA     T    A    -    - ATTTTGATTGGATGTAGATCGGTGGAAGCAACAATTAGTTGT
     GTATG TTGG TTCA AATC A                                          
     ||||| |||| |||| |||| |                                           
     CGTAC AACC AGGT TAGG A                                          
ATTCA     T    A    G    C GTAGGTACAAATCTGTTCTTAGTATAGTTTTCACTAGGTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4250140

TTAGAGTATGTTTGGATTCAAATCAATTTTGATTGGATGTAGATCGGTGGAAGCAACAATTAGTTGTTTTTGGATCACTTTTGATATGATTCTTGTCTAAACATGGATGACGGATGTGGAACCAATCATGCACTTA

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