SE4250141

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2909
  • Cajanus cajan
  • SE4250141
  • PIF/harbinger
  • To38
  • Scaffold127279:42693-42909
  • AAA
  • GCGTGTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
AAACA C        --ATT        AGCAAGCTAACGCACGTATTTGGATGAAAAAACGTGATTCCTCTCTTTGAATAGATGTTTGGTTTTCTCTTCTTTACACAA
     G GTGTTTGG     TGCGTTAG                                                                                 
     | ||||||||     ||||||||                                                                                 T
     C CACAAACC     GCAAAATT                                                                                 
AAACA A        ACAAC        CTTAACTAAATAGTTTTAGTTAAAAGTTTTGCATCTTCGATAAAAATAATCGAAGTCCGTTTTAACTAAAAGTGTGAATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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